A forest is never just its trees. There are roots, fungi, moisture, fallen leaves, and countless exchanges happening beneath the surface. I find that image useful when thinking about the human body. We, too, are home to living communities, and understanding their relationships changes the questions we ask about health.
The microbiome brings a biological language to this sense of interconnection. Traditional medicine, plant knowledge, and spiritual practice bring other languages: nourishment, rhythm, relationship, belonging. I want space for all of them here, with enough care to recognize what each is actually describing.
Many landscapes, one body
The communities associated with our bodies include bacteria, fungi, viruses, and other microorganisms. Their habitats differ. The mouth, intestine, skin, and vagina offer different conditions, and even one region contains smaller neighborhoods. The Human Microbiome Project found considerable variation among healthy people, alongside patterns associated with particular body sites. There is no single microbial portrait that every healthy person must reproduce.
This matters when we encounter the word balance. A desirable arrangement in one location may be inappropriate in another. In the vagina, for example, communities dominated by certain lactobacilli are common among healthy reproductive-age women; greater microbial diversity is not automatically a better outcome. Ecology is specific to place.
It also invites a little numerical humility. The familiar claim that bacterial cells outnumber human cells ten to one has been revised. Modern estimates place them in a similar order of magnitude, with variation between individuals. We do not need an exaggerated statistic to find this relationship extraordinary.
The older language of relationship
Traditional approaches to medicine often invite us to notice the larger setting of a symptom: food, season, rest, emotion, and environment. I value that attention. It asks us to look at a person in the midst of a life, rather than treating the body as a collection of isolated compartments.
In the Daodejing, water offers an image of nourishment without force. I read that as a philosophical invitation to reconsider our relationship with our bodies. What changes when care begins with observation? What happens when we stop approaching every sensation as a problem to overpower?
For me, this is where spiritual practice belongs in the conversation. A sense of belonging to the living world has meaning in itself. Sitting beneath a tree, preparing food with attention, or feeling gratitude for a plant can be an act of relationship. Its value does not depend on turning the experience into a microbiome intervention.
From collecting organisms to understanding function
A list of microbes is only one layer of the story. Researchers also examine what those communities can do: their genes, chemical products, and interactions with their surroundings. The same organism can behave differently depending on the conditions around it. The useful question becomes more nuanced than whether a particular name appears on a report.
That is why I am interested in the whole ecology: the food arriving in the gut, the products meeting the skin, the hormonal setting of the vagina, and the daily rhythms of the person. These are starting points for thoughtful questions, not a universal protocol.
Begin with curiosity about your own patterns. Notice what feels nourishing, what repeatedly causes discomfort, and what has changed. Persistent symptoms deserve additional care and an appropriate specialist. A more ecological view of health should make us more attentive to the person in front of us—and to the remarkable living world we carry.
References & further reading
- Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome (2012)
- Ravel et al. Vaginal microbiome of reproductive-age women (2011)
- Sender et al. Revised estimates for the number of human and bacteria cells in the body (2016)
- Laozi. Daodejing, chapter 8; James Legge translation
For education and reflection. Individual needs vary. For persistent symptoms or personal guidance, seek additional care from a qualified clinician or appropriate specialist.

